_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-66
 Query name: gi|428160949|gb|AFY97791.1| glutathione peroxidase 1b [Sparus aurata]
 Query range: 2-187  (total 187)

 Target: /data/www-rg/seblastian_results/953315360/tempfiles/temptarget.fasta
 Chromosome: OMLM01008245.1:subseq_0,62344_ Strand: +
 Positions:
 -Exon 1  30402        30611
 -Exon 2  31275        31622

 Redox box: no

Query   AKFYDLTAKLLTGETFKFSSLQGKVVLIENVASLUGTTTRDYTQMNELHERYAGKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEILMSLKY
        |/||/|||||| || | ||||||||||||||||||||| |||||||||||||| |||||||||||||||| <   663bp    > |||||/|||/||||
Target  AQFYNLTAKLLNGEAFNFSSLQGKVVLIENVASLUGTTVRDYTQMNELHERYASKGLVILGVPCNQFGHQ                ENCKNEEILLSLKY
        gcttacagactagggtatttccgaggcagaggtctgaagagtacaagccgctgaagcgacggctactgcc                gataaggacctcat
        cataatccattagactatcctagattttaatcctggcctgaacataataagacgagttttgtcgaatgaa                aagaaaatttctaa
        agtccctagaataacttcacggcatcctgtcgacatgccgtccggcgccgccccggtacgagcccgcccg                gccgcaactgtggt
                                          *                                                                 

Query   IRPGNGFEPKFQLLEKVDVNGKDAHPMFVFLREKLPFPSDEPSALMTDPKLIIWSPVCRNDVAWNFEKFLIGPDGVPFKRYSRRFLTSDIEGDIKKLLEK
        /|||||||||||||||||||||||||/|||||| || |||||/||||||| ||||||||||||||||||||| ||||||||||||||||// |||||| /
Target  VRPGNGFEPKFQLLEKVDVNGKDAHPLFVFLRESLPSPSDEPAALMTDPKFIIWSPVCRNDVAWNFEKFLIGADGVPFKRYSRRFLTSDLDADIKKLLNQ
        gccgagtgcatcccgagggagaggccttgtcagacctcaggcggcaagcataatacgtaagggtatgatcagggggctactaaatcaagcgggaaaccac
        tgcgagtacatattaatatagaacactttttgagtcccgaacccttcacatttggctggaatcgataatttgcagtctagagggttcgatacataattaa
        tttatccgagtgcggggtgtcgtttcgcgtggattaccccaatgggccagcccgttccgccgcgctggcccgcccaacgtccggtcctcctaccggccca
                                                                                                            

Query   AN
        |/
Target  AH
        gc
        ca
        ac
          
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 174 ; UGA-SECIS: 627

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = OMLM01008245.1:subseq_0,62344_ Strand = + Positions = 31797 - 31866
 Found by:  Infernal (score=40.26) Covels (score=30.99)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -16.76

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[((({(((((((......--.........)))))))})))]]}..--..-.)))))))..
 target  CGUUUUUAC---UUAAUGAAGACAUCCUCUGAAACC--AUGUAGUGAGGAGGGUAUCUGAUGA--AA-UGUAAAAAGG
                         ****           ^^^                       ****